Dataset Network

Abbreviations: Acc: Accumbens, Amy: Amygdala, BA: Basolateral Amygdala, CA: Central Amygdala, Cer: Cerebellum, FC: Frontal Cortex, Hip: Hippocampus, OB: Olfactory Bulb, S/A: Striatum/Accumbens, Str: Striatum, VM: Ventral Midbrain, WB: Whole Brain

Scroll down to add your dataset to the matrix and network.

Values shown are Bonferroni-adjusted p-values.

Click on a gene to search for it in IT-GED. Click and hold a gene to move it. Resize the network using the handle on the bottom-right.

Visualizer Settings Export Network

Increase this value to increase the spacing between nodes.

Node label color:

Only show datasets that share at least different dataset interactions with other genes

Genes that connect to other genes with a greater number of unique connections may be more significant. Details

Reset network

Unfortunately, export is currently not available due to a change in Flash security settings.


Export as PDF

Export as PNG

Export as SVG

Export as XGMML

Export as GraphML

Note: The data files still include any genes that were filtered out. To remove them in Cytoscape, apply a filter for the node.numDiffPubs property.

Download the desktop version of Cytoscape.


Stop loading...

This is taking longer than expected. If your internet connection isn't the fastest or you are loading a large network, please continue waiting. If you have any Flash-blocking software installed (you can check below whether your flash version is displayed), please ensure that is on the whitelist. Otherwise, if the problem persists, please contact us. Thanks!

The Cytoscape Web visualizer requires that the Adobe Flash Player is installed (or use the Google Chrome browser, which has a built-in Flash viewer, to avoid installing Flash system-wide).

Download the XGMML or SIF file for use in the desktop version of Cytoscape.

Powered by Cytoscape Web (v. 1.0.4).

Javascript needs to be enabled to display a network, but you may still download the source files.